Package: Bioi 0.2.10

Bioi: Biological Image Analysis

Single linkage clustering and connected component analyses are often performed on biological images. 'Bioi' provides a set of functions for performing these tasks. This functionality is implemented in several key functions that can extend to from 1 to many dimensions. The single linkage clustering method implemented here can be used on n-dimensional data sets, while connected component analyses are limited to 3 or fewer dimensions.

Authors:Zachary Colburn

Bioi_0.2.10.tar.gz
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Bioi.pdf |Bioi.html
Bioi/json (API)
NEWS

# Install 'Bioi' in R:
install.packages('Bioi', repos = c('https://zcolburn.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/zcolburn/bioi/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

biological-data-analysisbiologycellcppimage-analysismicroscopy

3.81 score 13 scripts 192 downloads 6 exports 22 dependencies

Last updated 5 years agofrom:31137ab2a3. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 05 2024
R-4.5-win-x86_64OKNov 05 2024
R-4.5-linux-x86_64OKNov 05 2024
R-4.4-win-x86_64OKNov 05 2024
R-4.4-mac-x86_64OKNov 05 2024
R-4.4-mac-aarch64OKNov 05 2024
R-4.3-win-x86_64OKNov 05 2024
R-4.3-mac-x86_64OKNov 05 2024
R-4.3-mac-aarch64OKNov 05 2024

Exports:.perform_grouping.perform_partitioningeuclidean_linkerfind_blobsfind_min_distsidentify_thresholded_objects

Dependencies:assertthatclicpp11dplyrfansigenericsglueigraphlatticelifecyclemagrittrMatrixpillarpkgconfigR6Rcpprlangtibbletidyselectutf8vctrswithr

Bioi

Rendered fromBioi.Rmdusingknitr::rmarkdownon Nov 05 2024.

Last update: 2018-01-15
Started: 2017-12-31