Package: Bioi 0.2.10
Bioi: Biological Image Analysis
Single linkage clustering and connected component analyses are often performed on biological images. 'Bioi' provides a set of functions for performing these tasks. This functionality is implemented in several key functions that can extend to from 1 to many dimensions. The single linkage clustering method implemented here can be used on n-dimensional data sets, while connected component analyses are limited to 3 or fewer dimensions.
Authors:
Bioi_0.2.10.tar.gz
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Bioi.pdf |Bioi.html✨
Bioi/json (API)
NEWS
| # Install 'Bioi' in R: |
| install.packages('Bioi', repos = c('https://zcolburn.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/zcolburn/bioi/issues
biological-data-analysisbiologycellcppimage-analysismicroscopycpp
Last updated 5 years agofrom:31137ab2a3. Checks:12 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 05 2025 |
| R-4.5-win-x86_64 | OK | Mar 05 2025 |
| R-4.5-mac-x86_64 | OK | Mar 05 2025 |
| R-4.5-mac-aarch64 | OK | Mar 05 2025 |
| R-4.5-linux-x86_64 | OK | Mar 05 2025 |
| R-4.4-win-x86_64 | OK | Mar 05 2025 |
| R-4.4-mac-x86_64 | OK | Mar 05 2025 |
| R-4.4-mac-aarch64 | OK | Mar 05 2025 |
| R-4.4-linux-x86_64 | OK | Mar 05 2025 |
| R-4.3-win-x86_64 | OK | Mar 05 2025 |
| R-4.3-mac-x86_64 | OK | Mar 05 2025 |
| R-4.3-mac-aarch64 | OK | Mar 05 2025 |
Exports:.perform_grouping.perform_partitioningeuclidean_linkerfind_blobsfind_min_distsidentify_thresholded_objects
Dependencies:assertthatclicpp11dplyrfansigenericsglueigraphlatticelifecyclemagrittrMatrixpillarpkgconfigR6Rcpprlangtibbletidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Return the group number for each localization. | .euclidean_linker_cpp |
| For all points in matrix 1, return the distance to and index of the nearest point in matrix 2. | .find_min_dists_cpp |
| Return the group number for each localization. | .perform_grouping |
| Return the group number for each localization. | .perform_partitioning |
| 'Bioi' package | Bioi |
| Return the group number for each localization. | euclidean_linker |
| Assign all neighboring pixels the same group number. | find_blobs |
| For all points in matrix 1, return the distance to and index of the nearest point in matrix 2. | find_min_dists |
| Assign all neighboring pixels the same group number. | identify_thresholded_objects |
